Comparison of wild rice (Oryza longistaminata) tissues identifies rhizome-specific bacterial and archaeal endophytic microbiomes communities and network structures
文献类型: 外文期刊
作者: Peng, Xiaojue 1 ; Xie, Jian 1 ; Li, Wenzhuo 1 ; Xie, Hongwei 3 ; Cai, Yaohui 3 ; Ding, Xia 1 ;
作者机构: 1.Nanchang Univ, Sch Life Sci, Nanchang, Jiangxi, Peoples R China
2.Nanchang Univ, Jiangxi Prov Peoples Hosp, Nanchang, Jiangxi, Peoples R China
3.Jiangxi Acad Agr Sci, Jiangxi Super Rice Res & Dev Ctr, Nanchang, Jiangxi, Peoples R China
期刊名称:PLOS ONE ( 影响因子:3.24; 五年影响因子:3.788 )
ISSN: 1932-6203
年卷期: 2021 年 16 卷 2 期
页码:
收录情况: SCI
摘要: Compared with root-associated habitats, little is known about the role of microbiota inside other rice organs, especially the rhizome of perennial wild rice, and this information may be of importance for agriculture. Oryza longistaminata is perennial wild rice with various agronomically valuable traits, including large biomass on poor soils, high nitrogen use efficiency, and resistance to insect pests and disease. Here, we compared the endophytic bacterial and archaeal communities and network structures of the rhizome to other compartments of O. longistaminata using 16S rRNA gene sequencing. Diverse microbiota and significant variation in community structure were identified among different compartments of O. longistaminata. The rhizome microbial community showed low taxonomic and phylogenetic diversity as well as the lowest network complexity among four compartments. Rhizomes exhibited less phylogenetic clustering than roots and leaves, but similar phylogenetic clustering with stems. Streptococcus, Bacillus, and Methylobacteriaceae were the major genera in the rhizome. ASVs belonging to the Enhydrobacter, YS2, and Roseburia are specifically present in the rhizome. The relative abundance of Methylobacteriaceae in the rhizome and stem was significantly higher than that in leaf and root. Noteworthy type II methanotrophs were observed across all compartments, including the dominant Methylobacteriaceae, which potentially benefits the host by facilitating CH4-dependent N-2 fixation under nitrogen nutrient-poor conditions. Our data offers a robust knowledge of host and microbiome interactions across various compartments and lends guidelines to the investigation of adaptation mechanisms of O. longistaminata in nutrient-poor environments for biofertilizer development in agriculture.
- 相关文献
作者其他论文 更多>>
-
Integrated transcriptomic and metabolomic analysis provides insight into the pollen development of CMS-D1 rice
作者:Wang, Jie;Long, Weixiong;Luo, Lihua;Qian, Mingjuan;Chen, Wei;Luo, Laiyang;Xu, Weibiao;Li, Yonghui;Cai, Yaohui;Xie, Hongwei;Ying, Suping;Peng, Xiaojue
关键词:Cytoplasmic male sterility; CMS-D1; Transcriptome; Metabolome; Jasmonic acid
-
Natural variation of HTH5 from wild rice, Oryza rufipogon Griff., is involved in conferring high-temperature tolerance at the heading stage
作者:Cao, Zhibin;Cai, Yaohui;Zeng, Bohong;Zhao, Jialiang;Tang, Xiuying;Lu, Ming;Wang, Huimin;Zhu, Xuejing;Wu, Xiaofeng;Yuan, Linfeng;Wan, Jianlin;Tang, Huiwu
关键词:rice; quantitative trait locus; near-isogenic line; heat tolerance; map-based cloning
-
Development of InDel markers for Oryza sativa ssp. javanica based on whole-genome resequencing
作者:Long, Weixiong;Li, Yonghui;Luo, Lihua;Luo, Laiyang;Xu, Weibiao;Cai, Yaohui;Xie, Hongwei;Yuan, Zhengqing
关键词:
-
Whole Genome Resequencing of 20 Accessions of Rice Landraces Reveals Javanica Genomic Structure Variation and Allelic Genotypes of a Grain Weight Gene TGW2
作者:Long, Weixiong;Luo, Lihua;Luo, Laiyang;Xu, Weibiao;Li, Yonghui;Cai, Yaohui;Xie, Hongwei
关键词:Oryza sativa javanica; SNPs; InDels; variant calling; specific variation; grain shapes
-
Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata)
作者:Xie, Jian;Wang, Xiaoqing;Xu, Jiawang;Liu, Yizheng;Ding, Xia;Xie, Hongwei;Cai, Yaohui
关键词:Plant microbiome; Wild rice; Drought; Oryza longistaminata; Microbial community assembly; Host microbial ecology
-
Fine mapping of the qHTB1-1QTL, which confers heat tolerance at the booting stage, using an Oryza rufipogon Griff. introgression line
作者:Cao, Zhibin;Li, Yao;Zeng, Bohong;Tang, Xiuying;Long, Qizhang;Wu, Xiaofeng;Cai, Yaohui;Yuan, Linfeng;Wan, Jianlin;Li, Yao;Tang, Huiwu
关键词:
-
Effects of external Mn2+ activities on OsNRAMP5 expression level and Cd accumulation in indica rice
作者:Cai, Yimin;Wang, Meie;Chen, Baodong;Chen, Weiping;Cai, Yimin;Chen, Weiping;Xu, Weibiao;Xie, Hongwei;Long, Qizhang;Cai, Yaohui
关键词:Cadmium; Manganese; OsNRAMP5; Indica rice; Chelator-buffered solution